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23 April 2025
Dr. Chihiro Hisatsune and Dr. Yasuko Ono, (a project leader at the time), of the Calpain Group, published an article, “In situ detection of activation of CAPN3, a responsible gene product for LGMDR1, in mouse skeletal myotubes” in The Journal of Biological Chemistry.

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Discovery of the role of protease activity of CAPN3, a responsible gene product for Limb Girdle Muscular Dystrophy R1

Dr. Chihiro Hisatsune and Dr. Yasuko Ono, (a project leader at the time), of the Calpain Group, published an article entitled “In situ detection of activation of CAPN3, a responsible gene product for LGMDR1, in mouse skeletal myotubes” in the Journal of Biological Chemistry. They succeeded in elucidating the dynamics of calpain 3 (CAPN3) after activation in skeletal myotubes and identified its endogenous substrates. The findings of this research are expected to contribute to understanding of the pathogenesis of LGMDR1, which is caused by CAPN3 deficiency.

<Title of the paper>
“In situ detection of activation of CAPN3, a responsible gene product for LGMDR1, in mouse skeletal myotubes”
<Authors>
Chihiro Hisatsune*, Fumiko Shinkai-Ouchi, Shoji Hata, and Yasuko Ono*
<Journal>
Journal of Biological Chemistry
 DOI: 10.1016/j.jbc.2025.108536

Highlights of the research

  • Production of an antibody that specifically recognizes activated CAPN3
  • Visualization of the activation status of CAPN3 in mouse myotubes
  • Identification of the role of protease activity of CAPN3 in skeletal myotubes

Research Background

Limb girdle muscular dystrophy R1 (LGMDR1)[1] is an incurable disease characterized by progressive muscle weakness in the proximal muscles of the extremities, affecting about 2 in 100,000 people. Most patients with LGMDR1 develop the disease in adolescence, suffer from gradually weakening muscles, and become wheelchair-bound at their 30s. To date, no curative treatment of LGMDR1 has been established. In the early 1990s, calcium-dependent cysteine protease[2] "calpain [3]3" was identified as the responsible gene product for LGMDR1. Then, numerous researchers have extensively studied biochemical characteristics of CAPN3 to elucidate the pathogenesis of LGMDR1 and revealed several enigmatic features of CAPN3. For example, CAPN3 has an insertion sequence “IS1” in the protease region unlike classical calpain[4]. The insertion sequence renders CAPN3 inactive under resting conditions, and the autolytic removal of IS1 is therefore necessary for CAPN3 to form a catalytic active center, enabling it to hydrolyze other substrates. Calpain 3 also associates with titin[5], a structural protein in the sarcomere[6] of myofibrils[7] in muscle cells (Fig. 1). However, due to its rapid autolytic properties and uncertain substrates in living cells, its activation mechanism and physiological function in skeletal muscles remain unknown.

Results

The research group focused on the autolysis of CAPN3 during activation, and challenged to develop an antibody that recognizes the CAPN3’s autolytic processing (Fig. 2A). They succeeded in producing an antibody that differentiate between wild-type CAPN3 and a protease-inactive CAPN3 mutant, and named it Autolytic site within IS1 (AIS1) antibody (Fig. 2B). The antibody visualized activation process of CAPN3, which was exogenously overexpressed in cultured cells, by ouabain, a cardiotonic steroid[8]. They also found that ouabain triggered a small but long-lasting cytoplasmic increase in intracellular calcium [8], which was not sufficient for CAPN1 activation.

The research group further examined the subcellular localization of endogenous CAPN3 in primary cultured skeletal myotubes. They found that CAPN3 predominantly localizes at the M band of sarcomeres in resting skeletal muscle myotubes. Furthermore, they demonstrated that CAPN3 translocated from the M band into the cytoplasm after ouabain stimulation (Fig. 3). The CAPN3’s translocation was not observed in skeletal myotubes obtained from knock-in mice expressing activity-deficient mutant of CAPN3. Therefore, they concluded that the protease activity of CAPN3 is essential for the translocation of CAPN3.

Finally, the research group examined the endogenous substrates of the activated CAPN3 in skeletal myotubes. They found degradation of spectrin and talin, cytoskeletal proteins that had previously been reported to be digested by CAPN3 in vitro, after ouabain stimulation. These phenomena were not observed in skeletal myotubes from knock-in mice expressing the inactive form of CAPN3, confirming that spectrin and talin are genuine substrates of CAPN3 in skeletal myotubes.

Significance and future directions

The research group demonstrated that the protease activity of CAPN3 is essential for its translocation from M-bands into the cytoplasm and the subsequent digestion of, at least, two cytoskeletal proteins, spectrin and talin, in intact skeletal myotubes. There are many mutations in CAPN3 with inactive or decreased protease activities in the patients with LGMDR1. Therefore, the failure of degradation of spectrin and talin by CAPN3 may be, at least in part, the underlining pathogenesis of LGMDR1.

It is important future issues to find physiological conditions that cause a slight and long-lasting increase in calcium level in skeletal myotubes and to examine the precise mechanism by which CAPN3 is activated in such a low level of intracellular calcium. Since ouabain application can selectively activate CAPN3, it is a suitable pharmaceutical drug for identifying the CAPN3’ substrates in skeletal myotubes. These future studies will provide more knowledge on the pathogenesis of LGMDR1, which will lead to the development of a new treatment for LGMDR1.

Research Support

This research was supported by Japan Society for the Promotion of Science (JSPS) Grants-in-Aid for Scientific Research (C) (Chihiro Hisatsune, Grant Number 22K07014), Grants-in-Aid for Scientific Research (C) (Yasuko Ono, Grant Number 22K06156).

Annotations

[1]Limb girdle muscular dystrophy R1 (LGMDR1)
One of the progressive muscle diseases characterized by muscle weakness and muscle atrophy. LGMDR1 mainly affects the muscles close to the trunk (proximal muscles) and causes motor dysfunction.
[2]Calcium-dependent cysteine protease
One of the proteolytic enzymes having cysteine residues as the active center. Among them, calcium-dependent cysteine proteases are activated by structural changes caused by calcium binding and degrade proteins.
[3]Calpain
A type of proteases that are activated by calcium ions in cells and degrade proteins in a limited way. In humans, 15 subfamilies of calpain have been reported. Abnormality of calpain activity are thought to be related to the onset and deterioration of muscle diseases, neurological function, diabetes, skin diseases, eye diseases, etc.
[4]Classical calpain
A group of calpain composed of the same domain structure as Calpain 1 and 2. They have NH2-terminal α-helix, protease domains [PC1 and PC2], a calpain-type β-sandwich (CBSW) domain, and a penta-EF-hand (PEF) domain (see Figure 2A).
[5]Titin
A giant protein with a molecular weight of 3,000~3,700 kDa that spans the Z-band to M-band of sarcomeres. Also known as connectin. It has an elastic domain structure and generates tension against passive stretching.
[6]Sarcomere
The smallest constituent unit of myofibrils. It refers the region between Z-band and Z-band.
[7]Myofibril
The structure in myocytes, where myosin filaments and actin filaments are arranged in an orderly manner. It is a basic unit that makes up muscle tissues, and muscle contraction occurs when myosin fibers pull actin fibers together and slide them in.
[8]Cardiotonic steroid
Medicines that enhance the contractile force of the heart.
[9]Intracellular calcium
While the extracellular calcium concentration is ~1 mM, the intracellular calcium concentration is regulated around 100 nM under resting conditions. When cells are activated by various stimuli from outside of the cells, the intracellular calcium concentration increases due to the release of calcium from the endoplasmic reticulum and the influx of calcium from outside of the cells.
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