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Regenerative Medicine Project

Integration of iPS cell and genome editing technologies to cure genetic disorders

Project Leader Yuichiro Miyaoka

Project Leader
Yuichiro Miyaoka

Research Summary

Genome editing technology allows us to rewrite the genetic information in virtually any species and any cell type including human cells. Our focus is on human iPS cells, a type of pluripotent stem cell that can be generated from patients’ cells by introduction of specific transcription factors, and differentiated into other cell types. Our goal is to use genome editing in iPS cells to both model human diseases, and develop new therapies. To achieve this goal, we are addressing the following challenges.

  • To establish isogenic disease models for cardiomyopathy, hepatic disease, and neuronal disease to study their pathogenesis.
  • To develop therapeutic strategies by transplantation of genetically engineered iPS cells to cure genetic disorders.
  • To establish a way to directly manipulate genetic information in patients’ cells.
  • To improve the accuracy and predictability of genome editing.

Our goal and approaches: By introducing or correcting pathogenic mutations in iPS cells, we can establish isogenic disease models to study molecular pathogenic mechanisms. We are modeling cardiomyopathy, hepatic disease, and neuronal disease. Genetically engineered iPS cells can also be used for transplantation therapies. We can potentially correct mutations in iPS cells derived from patients, or even engineer the cells to express therapeutic molecules. We are targeting metabolic diseases by cell transplantation therapies. Because human iPS cells maintain the normal human genomic information, genome editing in human iPS cells can be used as a model to develop a way to directly manipulate genetic information in patients’ cells. We are also trying to improve the accuracy and predictability of genome editing technology.

Selected Publications

  • Takahashi G, et al. (2022) “Genome editing is induced in a binary manner in single human cells.” iScience. 25:105619.
  • *Song D, *Takahashi G, et al. (2022) “Retinoids rescue ceruloplasmin secretion and alleviate oxidative stress in Wilson’s disease-specific hepatocytes.” Hum. Mol. Genet. 31:3652-3671.
  • *Fenix AM, *Miyaoka Y, et al. (2021) “Gain-of-function cardiomyopathic mutations in RBM20 rewire splicing regulation and re-distribute ribonucleoprotein granules within processing bodies.” Nat Commun. 12:6324.
  • Kato-Inui T, et al. (2018) “Clustered regularly interspaced short palindromic repeats (CRISPR)/CRISPR-associated protein 9 with improved proof-reading enhances homology-directed repair.” Nucleic Acids Res. 46: 4677-4688.
  • Miyaoka Y, et al. (2018) “Detection and Quantification of HDR and NHEJ Induced by Genome Editing at Endogenous Gene Loci Using Droplet Digital PCR.” Methods Mol. Biol. 1768: 349-362.
  • Miyaoka Y, et al. (2016) “Systematic quantification of HDR and NHEJ reveals effects of locus, nuclease, and cell type on genome-editing.” Sci. Rep. 6: 23549.
  • Miyaoka Y, et al. (2014) “Isolation of single-base genome-edited human iPS cells without antibiotic selection.” Nat. Methods 11: 291-293.